{
  "_id": "6a228260cd65a98ecbd521b9",
  "Package": "InSilicoVA",
  "Type": "Package",
  "Title": "Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm",
  "Version": "1.4.2",
  "Date": "2025-07-21",
  "Authors@R": "c(person(given = c(\"Zehang\", \"Richard\"),\nfamily = \"Li\",\nrole = c(\"aut\", \"cre\"),\nemail = \"lizehang@gmail.com\"),\nperson(given = \"Tyler\",\nfamily = \"McCormick\",\nrole = \"aut\"),\nperson(given = \"Sam\",\nfamily = \"Clark\",\nrole = \"aut\"))",
  "SystemRequirements": "Java (>= 7)",
  "Description": "Computes individual causes of death and population\ncause-specific mortality fractions using the 'InSilicoVA'\nalgorithm from McCormick et al. (2016)\n<DOI:10.1080/01621459.2016.1152191>. It uses data derived from\nverbal autopsy (VA) interviews, in a format similar to the\ninput of the widely used 'InterVA' method. This package\nprovides general model fitting and customization for\n'InSilicoVA' algorithm and basic graphical visualization of the\noutput.",
  "License": "GPL-2",
  "URL": "https://github.com/verbal-autopsy-software/InSilicoVA",
  "BugReports": "https://github.com/verbal-autopsy-software/InSilicoVA/issues",
  "RoxygenNote": "7.3.2",
  "Config/pak/sysreqs": "make default-jdk libssl-dev",
  "Repository": "https://verbal-autopsy-software.r-universe.dev",
  "Date/Publication": "2025-08-08 18:40:10 UTC",
  "RemoteUrl": "https://github.com/verbal-autopsy-software/insilicova",
  "RemoteRef": "HEAD",
  "RemoteSha": "da922e77d71e65d6ad8facd2bbb9f60e43effb7e",
  "RemoteSubdir": "InSilicoVA",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-05 07:57:58 UTC",
    "User": "root"
  },
  "Author": "Zehang Richard Li [aut, cre],\nTyler McCormick [aut],\nSam Clark [aut]",
  "Maintainer": "Zehang Richard Li <lizehang@gmail.com>",
  "MD5sum": "41399fc3c52e3483e31852049f09110b",
  "_user": "verbal-autopsy-software",
  "_type": "src",
  "_file": "InSilicoVA_1.4.2.tar.gz",
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  "_created": "2026-06-05T07:57:58.000Z",
  "_published": "2026-06-05T08:01:36.301Z",
  "_distro": "noble",
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  "_buildurl": "https://github.com/r-universe/verbal-autopsy-software/actions/runs/27002836857",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/verbal-autopsy-software/insilicova",
  "_commit": {
    "id": "da922e77d71e65d6ad8facd2bbb9f60e43effb7e",
    "author": "Richard Li <lizehang@gmail.com>",
    "committer": "Richard Li <lizehang@gmail.com>",
    "message": "allow cause skipping by missing elements too\n",
    "time": 1754678410
  },
  "_maintainer": {
    "name": "Zehang Richard Li",
    "email": "lizehang@gmail.com",
    "login": "richardli",
    "description": "",
    "uuid": 2946093
  },
  "_registered": true,
  "_dependencies": [
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    {
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    {
      "package": "coda",
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    },
    {
      "package": "ggplot2",
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    },
    {
      "package": "InterVA5",
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    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
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  "_owner": "verbal-autopsy-software",
  "_selfowned": true,
  "_usedby": 2,
  "_updates": [
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      "week": "2025-30",
      "n": 1
    },
    {
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  ],
  "_tags": [],
  "_topics": [
    "va-algorithm",
    "openjdk"
  ],
  "_stars": 0,
  "_contributors": [
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  "_userbio": {
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    "type": "organization",
    "name": "Verbal Autopsy Software"
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/InSilicoVA"
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  "_mentions": 18,
  "_devurl": "https://github.com/verbal-autopsy-software/insilicova",
  "_searchresults": 40,
  "_rbuild": "4.6.0",
  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/InSilicoVA.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/verbal-autopsy-software/insilicova",
  "_realowner": "verbal-autopsy-software",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0",
      "date": "2015-12-04"
    },
    {
      "version": "1.1",
      "date": "2016-03-10"
    },
    {
      "version": "1.1.1",
      "date": "2016-03-27"
    },
    {
      "version": "1.1.2",
      "date": "2016-03-29"
    },
    {
      "version": "1.1.3",
      "date": "2017-01-06"
    },
    {
      "version": "1.1.4",
      "date": "2017-01-25"
    },
    {
      "version": "1.1.5",
      "date": "2017-11-19"
    },
    {
      "version": "1.2.0",
      "date": "2018-05-16"
    },
    {
      "version": "1.2.2",
      "date": "2018-07-28"
    },
    {
      "version": "1.2.3",
      "date": "2018-08-30"
    },
    {
      "version": "1.2.4",
      "date": "2018-09-13"
    },
    {
      "version": "1.2.5",
      "date": "2018-10-29"
    },
    {
      "version": "1.2.6",
      "date": "2020-02-18"
    },
    {
      "version": "1.2.7",
      "date": "2020-02-18"
    },
    {
      "version": "1.2.8",
      "date": "2020-04-15"
    },
    {
      "version": "1.2.9",
      "date": "2020-05-10"
    },
    {
      "version": "1.3.0",
      "date": "2020-06-30"
    },
    {
      "version": "1.3.1",
      "date": "2021-05-11"
    },
    {
      "version": "1.3.2",
      "date": "2021-05-26"
    },
    {
      "version": "1.3.3",
      "date": "2021-07-02"
    },
    {
      "version": "1.3.4",
      "date": "2021-08-02"
    },
    {
      "version": "1.3.5",
      "date": "2022-03-11"
    },
    {
      "version": "1.4.0",
      "date": "2022-09-29"
    },
    {
      "version": "1.4.2",
      "date": "2025-07-21"
    }
  ],
  "_exports": [
    "csmf.diag",
    "extract.prob",
    "get.indiv",
    "indivplot",
    "insilico",
    "insilico.fit",
    "insilico.train",
    "mapICD",
    "physician_debias",
    "stackplot",
    "updateIndiv"
  ],
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      "title": "Translation list of COD codes",
      "object": "causetext",
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      "class": [
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        "array"
      ],
      "fields": [
        "CAUSE.C.",
        "CAUSETXT.C.40",
        ""
      ],
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      "table": true,
      "tojson": true
    },
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        "Pulmonary tuberculosis",
        "Pertussis",
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        "Oral neoplasms",
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        "Respiratory neoplasms",
        "Breast neoplasms",
        "Reproductive neoplasms MF",
        "Other and unspecified neoplasms",
        "Severe anaemia",
        "Severe malnutrition",
        "Diabetes mellitus",
        "Acute cardiac disease",
        "Sickle cell with crisis",
        "Stroke",
        "Other and unspecified cardiac dis",
        "Chronic obstructive pulmonary dis",
        "Asthma",
        "Acute abdomen",
        "Liver cirrhosis",
        "Renal failure",
        "Epilepsy",
        "Other and unspecified NCD",
        "Congenital malformation",
        "Prematurity",
        "Birth asphyxia",
        "Neonatal pneumonia",
        "Neonatal sepsis",
        "Other and unspecified neonatal CoD",
        "Fresh stillbirth",
        "Macerated stillbirth",
        "Road traffic accident",
        "Other transport accident",
        "Accid fall",
        "Accid drowning and submersion",
        "Accid expos to smoke fire & flame",
        "Contact with venomous plant/animal",
        "Exposure to force of nature",
        "Accid poisoning & noxious subs",
        "Intentional self-harm",
        "Assault",
        "Other and unspecified external CoD",
        "Ectopic pregnancy",
        "Abortion-related death",
        "Pregnancy-induced hypertension",
        "Obstetric haemorrhage",
        "Obstructed labour",
        "Pregnancy-related sepsis",
        "Anaemia of pregnancy",
        "Ruptured uterus",
        "Other and unspecified maternal CoD"
      ],
      "rows": 245,
      "table": true,
      "tojson": true
    },
    {
      "name": "condprobnum",
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      "class": [
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        "array"
      ],
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        "HIV/AIDS related death",
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        "Reproductive neoplasms MF",
        "Other and unspecified neoplasms",
        "Severe anaemia",
        "Severe malnutrition",
        "Diabetes mellitus",
        "Acute cardiac disease",
        "Sickle cell with crisis",
        "Stroke",
        "Other and unspecified cardiac dis",
        "Chronic obstructive pulmonary dis",
        "Asthma",
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        "Liver cirrhosis",
        "Renal failure",
        "Epilepsy",
        "Other and unspecified NCD",
        "Congenital malformation",
        "Prematurity",
        "Birth asphyxia",
        "Neonatal pneumonia",
        "Neonatal sepsis",
        "Other and unspecified neonatal CoD",
        "Fresh stillbirth",
        "Macerated stillbirth",
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      "title": "100 records of Sample Input together with two simulated physician codes",
      "object": "RandomPhysician",
      "file": "RandomPhysician.rda",
      "class": [
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      "fields": [
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        "child",
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      "title": "100 records of Sample debiased physician codes",
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