Package: InSilicoVA 1.4.0
Zehang Richard Li
InSilicoVA: Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm
Computes individual causes of death and population cause-specific mortality fractions using the 'InSilicoVA' algorithm from McCormick et al. (2016) <doi:10.1080/01621459.2016.1152191>. It uses data derived from verbal autopsy (VA) interviews, in a format similar to the input of the widely used 'InterVA' method. This package provides general model fitting and customization for 'InSilicoVA' algorithm and basic graphical visualization of the output.
Authors:
InSilicoVA_1.4.0.tar.gz
InSilicoVA_1.4.0.zip(r-4.5)InSilicoVA_1.4.0.zip(r-4.4)InSilicoVA_1.4.0.zip(r-4.3)
InSilicoVA_1.4.0.tgz(r-4.4-any)InSilicoVA_1.4.0.tgz(r-4.3-any)
InSilicoVA_1.4.0.tar.gz(r-4.5-noble)InSilicoVA_1.4.0.tar.gz(r-4.4-noble)
InSilicoVA_1.4.0.tgz(r-4.4-emscripten)InSilicoVA_1.4.0.tgz(r-4.3-emscripten)
InSilicoVA.pdf |InSilicoVA.html✨
InSilicoVA/json (API)
NEWS
| # Install 'InSilicoVA' in R: |
| install.packages('InSilicoVA', repos = c('https://verbal-autopsy-software.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/verbal-autopsy-software/insilicova/issues
- RandomPhysician - 100 records of Sample Input together with two simulated physician codes
- RandomVA1 - 1000 records of Sample Input
- RandomVA2 - 100 records of Sample Input
- SampleCategory - Correspondence between InterVA causes and the physician coded cause categories
- SamplePhysician - 100 records of Sample debiased physician codes
- causetext - Translation list of COD codes
- condprob - Conditional probability table used by InterVA-4
- condprobnum - Conditional probability values used by InterVA-4
- probbase - Conditional probability of InterVA4
- probbase3 - Conditional probability of InterVA4.03
Last updated 1 years agofrom:9a2eb1750a. Checks:OK: 5 NOTE: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 17 2024 |
| R-4.5-win | NOTE | Sep 17 2024 |
| R-4.5-linux | NOTE | Sep 17 2024 |
| R-4.4-win | OK | Sep 17 2024 |
| R-4.4-mac | OK | Sep 17 2024 |
| R-4.3-win | OK | Sep 17 2024 |
| R-4.3-mac | OK | Sep 17 2024 |
Exports:csmf.diagextract.probget.indivindivplotinsilicoinsilico.fitinsilico.trainmapICDphysician_debiasstackplotupdateIndiv
Dependencies:cellrangerclicodacolorspacecpp11crayoncurlfansifarverggplot2gluegtablehmsInterVA5isobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigprettyunitsprogressR6RColorBrewerreadxlrematchrJavarlangscalestibbleutf8vctrsviridisLitewithr
